RNAmotifs 2.0
Computational framework integrating multivalent RNA motifs discovery with in vivo RNA binding proteins splicing regulatory evidence to infer motif-protein associations.
KDM
Embedding DNA/RNA motifs and sequences in a shared k-mer space for unified discovery, analysis and binding prediction.
Kandinsky
R package for deriving functional insights on cellular ecosystems from neighbour analysis of spatial omics data.
GSECA
R software implementing Gene Set Enrichment Class Analysis to detect deregulated biological processes in heterogeneous datasets using RNA sequencing experiments.
RNAmotifs
Integrated R, C++, Python software that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences (multivalent RNA motifs) bound by RNA-binding proteins.
CloneR
R application that evaluates the clone composition of a tumour.
MEGA-V
R application for the identification of cancer driver genes.
GeCo++
Genomic Computation C++ Library for managing genomic elements annotation, sequences and positional genomic features.
All our code is available @ this GitHub page.