The C.G.B. team

Such ordinary people

Group Leader


Matteo Cereda

M.Eng., Ph.D.

Matteo was born in Lecco (IT) and he graduated in Biomedical Engineering from the Polytechnic University of Milan in 2005. After a few years spent as a junior fellow at the IRCCS 'Medea' (Bosisio Parini, IT), he got his Ph.D. in Complex system in Genomics from the University of Turin in 2010. During this time, Matteo joined the group of Jernej Ule at the MRC LMB (Cambridge, UK), where he focused on protein-RNA interactions. As a postdoc, he moved to the European Institute of Oncology (IEO) and then at the King's College London (UK) in the group of Francesca Ciccarelli. There he studied tumor evolution and heterogeneity in cancer progression and drug resistance being involved in large cancer sequencing programs.
Since 2019 he leads the Cancer Genomics and Bioinformatics (CGB) unit at the Italian Institute for Genomic Medicine (IIGM) in Torino.

Matteo is interested in:

  • Alternative Splicing
  • Tumor evolution
  • Big Data analysis

Members


Marco Del Giudice

Ph.D.

Marco graduated in Physics of Complex Systems at the University of Torino in 2014 with a theoretical work about stochastic thermodynamics in chemosensing. He then entered the Ph.D. program in Physics of the Politecnico di Torino and approached the field of computational biology. He dedicated his research to the study of gene regulatory networks, mainly working on models of microRNA-mediated gene regulation with a specific focus on the role stochastic fluctuations. During this period he also learned the basics wet-lab work and synthetic biology and developed custom pipelines for the analysis of fluorescence microscopy data. Marco got his Ph.D. in Physics in July 2018 and joined to C.G.B. lab.

Marco is interested in:

  • Machine Learning
  • Computational models
  • Tumor genetics

Greta Romano

Ph.D.

Greta graduated in Biology from the University of Turin in 2016 and she focused on bioinformatics applied to cancer research. After master thesis, Greta moved to the group of Christiane Pott at Christian-Albrechts-Universität (Kiel, Germany) where she studied clonal evolution in Lymphoma tumor. Then, she entered to the Ph.D. program Complex systems for Life sciences of University of Turin (IT) with the group of Francesca Cordero. During the PhD period, the project of Greta was devote to the definition and implementation of a computational pipeline to monitoring minimal residual disease in lymphoma patients through deep sequencing technique. Her interests were expand in the development of new reproducible computational pipelines of analysis applied on different types of data (NGS data). Finally, she was also involved in systems biology applications (i.e. mathematical models of neurodegenerative disease). Then, in 2019 Greta got her Ph.D. and joined the C.G.B. lab.

Greta is interested in:

  • Alternative Splicing
  • Tumor evolution
  • Big Data analysis

Serena Peirone

Ph.D. student

Serena graduated in Physics of Complex Systems at the university of Torino in 2018 presenting a work on network analysis of alternative splicing regulation to detect cancer-specific alterations. She joined the CGB lab as a Ph.D. student in Complex Systems for Life Science in October 2018.

Serena is interested in:

  • Networks and Big Data
  • Alternative splicing
  • Computer science

Francesca Priante

Ph.D. student

Francesca graduated in Mathematical Engineering at the University of Padova in 2018 with a thesis in epidemiology concerning the interplay between disease and information spreading in multiplex networks, performed at the Institute for Biocomputation and Physics of Complex Systems (BIFI) in Zaragoza. As a master student, Francesca entered the Erasum program visiting the Technical University of Eindhoven (Tu/E) at the department of Mathematics and Computer science. After her graduation she worked as an IT consultant in ALTEN and since September 2019 she joined the C.G.B. lab.

Francesca is interested in:

  • Double Strands Breaks
  • Mathematical modelling
  • Machine learning

Sarah Perrone

Ph.D. student

T.B.A.

Sarah is interested in:

  • Single-cell RNA sequencing
  • Tumor evolution
  • Big Data analysis

Fabiola Varese

Research Fellow

T.B.A.

Fabiola is interested in:

  • Oxford Nanopore sequencing
  • RNA methylation
  • Transcriptional regulation

Jessica Giordano

Ph.D.

T.B.A.

Jessica is interested in:

  • RNA sequencing
  • Tumor evolution

Alumni


Federica Gaudino

Ph.D.

Federica was the first biologist post-doc in our lab. She contributed to settle our experimental biology lab, implementing the Oxford Nanopore Technologies direct mRNA protocol and the Lexogen CORALL protocol for total mRNA sequencing. She is now professor at secondary high school!

Federica has interests in:

  • Alternative Splicing
  • Tumor evolution
  • Epitranscriptome

Mariachiara Grieco

Intership student

Bachelor student from the University of Florence, Mariachiara visited our lab for six months and developed a pipeline for the identification of m6A methilated sites from direct mRNA sequencing data generated using Oxford Nanopore Technologies.

Mariachiara is interested in:

  • direct mRNA sequencing
  • Epitranscriptome
  • Oxford Nanopore Technologies

C.G.B. friends  

We discuss our ideas with talented people:

Michele Caselle
Matteo Osella

Department of Theoretical Physics
Turin, IT

Prabhakar Rajan

UroSplice lab
London, UK

Uberto Pozzoli

Bioinformatics lab
Bosisio Parini, IT

Franca Fagioli

Paediatric Onco-Haematology, Stem Cell Transplantation and Cellular Therapy Division, City of Science and Health of Turin, Regina Margherita Children’s Hospital
Turin, IT

Jernej Ule

RNA Regulatory Networks lab
London, UK

Francesca Ciccarelli

Cancer Systems Biology lab
London, UK

Salvatore Oliviero

Dept. of Life Sciences & Systems Biology
Epigenetics Lab
Turin, IT

Roded Sharan

School of Computer Science
Tel-Aviv, IL