Bioinformatics and Data Science for Biology

01R basics — Data types 02R basics — Input / Output 03Functions & control structures 04R basics — Plot 05R Markdown 06Graphics — ggplot2 07Graphics — ggpubr 08Bioconductor 09Genome visualization 10Heatmap, Venn & UpSet 11Gene point mutations 12RNA-seq — Differential expression

01Operations and vectors 02Vectors 03Matrices 04Lists and Data frames 05Input / Output 06Functions, if/else, for, while 07Basic structures 08Basic plot 09Plot from DF, colors, margins 10R Markdown (1) 11R Markdown (2) 12ggplot2 13ggpubr 14Exercises on plots 15Bioconductor — DNAstrings 16Bioconductor — GenomicRanges 17GenomicRanges — Transformation 18Bioconductor — GenomicFeatures 19karyoploteR 20Heatmap, Venn & UpSet 21Exercise summary 22g3viz 23RNA-seq 24Exercises on RNA

01Operations and vectors 02Vectors 03Matrices 04Lists and Data frames 05Input / Output 06Functions, if/else, for, while 07Basic structures 08Basic plot 09Plot from DF, colors, margins 10R Markdown 11ggplot2 12ggpubr 13Exercises on plots 14Bioconductor — DNAstrings 15Bioconductor — GenomicRanges 16GenomicRanges — Transformation 17Bioconductor — GenomicFeatures 18karyoploteR 19Heatmap, Venn & UpSet 20Exercise summary 21g3viz 22RNA-seq 23Exercises on RNA

•Exam project — TCGA (2025)